Seurat-class : The Seurat Class - R Package Documentation
WEBB18 nov. 2023 · The Seurat object is a representation of single-cell expression data for R; each Seurat object revolves around a set of cells and consists of one or more Assay objects, or individual representations of expression data (eg. RNA-seq, ATAC-seq, etc). These assays can be reduced from their high-dimensional state to a lower-dimension …
List of paintings by Georges Seurat - Wikipedia
WEBB20 maj 2024 · Portrait of Seurat by Maximilien Luce. This is a list of notable paintings by Georges Seurat (2 December 1859 - 29 March 1891). He is a Neo-Impressionist painter and together with Paul …
Getting started with Seurat
WEBB15 apr. 2024 · The tutorial states that “The number of genes and UMIs (nGene and nUMI) are automatically calculated for every object by Seurat.”. The nUMI is calculated as num.mol <- colSums(object.raw.data) , i.e. each transcript is a unique molecule. The number of genes is simply the tally of genes with at least 1 transcript; num.genes <- …
Issues · satijalab/seurat · GitHub
WEBB18 dec. 2023 · R toolkit for single cell genomics. Contribute to satijalab/seurat development by creating an account on GitHub.
Analyzing PBMC scATAC-seq • Signac
WEBB4 apr. 2024 · ## An object of class Seurat ## 87561 features across 8728 samples within 1 assay ## Active assay: peaks (87561 features, 0 variable features) ## 2 layers present: counts, data What if I don’t have an H5 file? If you do not have the .h5 file, you can still run an analysis. You may have data that is formatted as three files, a counts file (.mtx), a …
Seurat - Combining Two 10X Runs • Seurat - satijalab.org
WEBB10 nov. 2023 · Merging Two Seurat Objects. merge() merges the raw count matrices of two Seurat objects and creates a new Seurat object with the resulting combined raw count matrix. To easily tell which original object any particular cell came from, you can set the add.cell.ids parameter with an c(x, y) vector, which will prepend the given identifier …
Seurat Technologies Raises $99M to Deploy Local Printing …
WEBB30 okt. 2023 · Seurat Technologies today announced a $99 million Series C round led by NVentures, NVIDIA's venture capital arm and Capricorn’s Technology Impact Fund focused on climate solutions. Seurat's latest funding round includes participation from new investors Honda Innovations and Cubit Capital, among others, as well as participation …
satijalab/seurat-wrappers: README.md - R Package Documentation
WEBB10 apr. 2024 · In satijalab/seurat-wrappers: Community-Provided Methods and Extensions for the Seurat Object SeuratWrappers. SeuratWrappers is a collection of community-provided methods and extensions for Seurat, curated by the Satija Lab at NYGC.These methods comprise functionality not presently found in Seurat, and are …
dimnames.Seurat : Feature and Cell Names - R Package …
WEBB18 nov. 2023 · Value. dimnames: A two-length list with the following values: A character vector with all features in the default assay. A character vector with all cells in x. dimnames<-: x with the feature and/or cell names updated to value.
Seuratoiminnan kehittämistuet on myönnetty - OKM - Opetus- ja ...
WEBB24 apr. 2023 · Seuratoiminnan kehittämistuet on myönnetty. Opetus- ja kulttuuriministeriö on myöntänyt liikunta- ja urheiluseuroille lähes 4,3 miljoonaa euroa seuratoiminnan kehittämistukea. Seuratuella edistetään lasten ja nuorten tasa-arvoisia ja yhdenvertaisia liikunnan harrastusmahdollisuuksia erityisesti matalan kynnyksen toiminnan kautta.